PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.VZN92
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 375aa    MW: 42289.4 Da    PI: 9.043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.VZN92genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09255282431
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkas 31 
                   hn  Er+RRdriN+++  L++l+P++ 
  Aradu.VZN92 255 VHNLSERKRRDRINEKMRALQDLIPNCN 282
                  6*************************73 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF511971.03E-51476No hitNo description
Gene3DG3DSA:4.10.280.102.8E-11248317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-9250317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.563251308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-6254283No hitNo description
PfamPF000104.6E-7255282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MHDLLMTQKE KNRRCSLWPQ NPIDFSEILE AFSIKVKSMI DYLLRCMARS ALVLGLKPHT  60
YRSVITVLLQ DNEVEGRSLI LACQIHVTRM LNTHLLAAAS NAVVAAFNEL LRFGFDLKIR  120
QRSFVAAHLI AIIYLCTITS NTVVAAFYDL IFNLAHLLTS ASNAVVAAFN KLLQFGFTIS  180
VTSNSHGIVE ELIGFGARVH ACARNEAELT KEKLMDSVCS EFQGKLNILD IEEESVGVKK  240
ACPTRDVKRS RSAEVHNLSE RKRRDRINEK MRALQDLIPN CNKVHLFILS NLEPYLLLLE  300
PKMQPEKQRN ETKRQEAWQV YGALLCAVGQ CMHEKAKIFS NLLSPTRAFS RPKAMIAMSS  360
MTSLCCNEIY TGVSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259264ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311313e-34KT031131.1 Glycine max clone HN_WYQ_57 bHLH transcription factor (Glyma10g28290.3) mRNA, partial cds.
GenBankKT0311323e-34KT031132.1 Glycine max clone HN_WYQ_58 bHLH transcription factor (Glyma20g22291.1) mRNA, partial cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-20phytochrome interacting factor 3